| Putaran 1 | ||||
|---|---|---|---|---|
| Senin | 4 Agustus 2008 | Persebaya | vs | Persibo |
| Sabtu | 9 Agustus 2008 | Perseman | vs | Persibo |
| Kamis | 14 Agustus 2008 | Persibo | vs | PSIM |
| Selasa | 19 Agustus 2008 | Persibo | vs | Persiba |
| Sabtu | 23 Agustus 2008 | PSIR | vs | Persibo |
| Rabu | 27 Agustus 2008 | Persiku | vs | Persibo |
| Rabu | 8 Oktober 2008 | Persibo | vs | Persibom |
| Minggu | 12 Oktober 2008 | Persibo | vs | Persigo |
| Kamis | 16 Oktober 2008 | Persibo | vs | Gresik United |
| Selasa | 28 Oktober 2008 | Persema | vs | Persibo |
| Sabtu | 1 November 2008 | Persekabpas | vs | Persibo |
| Rabu | 12 November 2008 | Persibo | vs | Persis |
| Minggu | 16 November 2008 | Persibo | vs | PSS Sleman |
| Putaran 2 | ||||
| Minggu | 25 Januari 2009 | Persibo | vs | Persiku |
| Kamis | 29 Januari 2009 | Persibo | vs | PSIR |
| Kamis | 12 Februari 2009 | PSS | vs | Persibo |
| Senin | 16 Februari 2009 | Persis | vs | Persibo |
| Sabtu | 28 Februari 2009 | Persibo | vs | Persekabpas |
| Rabu | 4 Maret 2009 | Persibo | vs | Persema |
| Jumat | 13 Maret2009 | Gresik United | vs | Persibo |
| Rabu | 18 Maret 2009 | Persigo | vs | Persibo |
| Minggu | 22 Maret 2009 | Persibom | vs | Persibo |
| Sabtu | 11 April 2009 | Persiba | vs | Persibo |
| Rabu | 15 April 2009 | PSIM | vs | Persibo |
| Selasa | 21 April 2009 | Persibo | vs | Perseman |
| Sabtu | 25 April 2009 | Persibo | vs | Persebaya |
| Jadwal Copa Indonesia | |||||
|---|---|---|---|---|---|
| Sabtu | 22 November 2008 | Arema | vs | Persibo | 2-1 |
| Kamis | 26 November 2008 | Persibo | vs | Arema | 3-1 |
| Babak 24 Besar | |||||
| Selasa | 13 Januari 2009 | Persibo | vs | PPSM | 6-0 |
| Sabtu | 17 Januari 2009 | PPSM | vs | Persibo | 0-3 |
| Babak 16 besar menunggu drawing Copa Indonesia pada tanggal 10 Februari 2009 Jadwal sewaktu - waktu bisa berubah | |||||
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